PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03738.1_g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 330aa    MW: 37993.6 Da    PI: 7.4066
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03738.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.7e-19185235256
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                               y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++ + kl+ge
  Rsa1.0_03738.1_g00005.1 185 LYRGVRQRH-WGKWVAEIRKPRN---RTRLWLGTFDTAEEAAMAYDREAFKLRGE 235
                              59******9.**********954...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.42E-34184244No hitNo description
PROSITE profilePS5103223.235185242IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-32185243IPR001471AP2/ERF domain
SMARTSM003802.8E-41185248IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-23185243IPR016177DNA-binding domain
PRINTSPR003672.6E-11186197IPR001471AP2/ERF domain
PfamPF008474.2E-14186235IPR001471AP2/ERF domain
PRINTSPR003672.6E-11208224IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:2000070Biological Processregulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MDTSKNKGKS IMSFCTSEVD NHEMEPEEAT DSSGSDMWKP FVGETSSTSQ RSLRKIRTID  60
RHNPYLLSSS YVTHDQPPPT TSLSVSSRVA FPFSLAPPSI QNQQQFSYPC DHPARQMQMI  120
SFGPKRQVQQ QQQQQHMMQY WRDILSPSGR MMMMNMLRQE GNDLPLPLPL QLTRSLIQPF  180
SATKLYRGVR QRHWGKWVAE IRKPRNRTRL WLGTFDTAEE AAMAYDREAF KLRGETARLN  240
FPELFLNKQE STPLHQKESA AEARERGTDH SSVVAAGGVS DETGWSEAWF SAIPEEWGQG  300
SPLWDDYHFP ISFNHNDKEE IMNKNHPDKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-20184242160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
3gcc_A1e-20184242463ATERF1
2gcc_A1e-20184242463ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009117462.11e-148PREDICTED: ethylene-responsive transcription factor ERF053
RefseqXP_013660129.11e-148PREDICTED: ethylene-responsive transcription factor ERF053-like
SwissprotQ9SKT11e-127ERF53_ARATH; Ethylene-responsive transcription factor ERF053
TrEMBLA0A078JQW71e-148A0A078JQW7_BRANA; BnaAnng29660D protein
TrEMBLM4EQS31e-148M4EQS3_BRARP; Uncharacterized protein
STRINGBra031146.1-P1e-147(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21412775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.11e-127ERF family protein